|Version||Docker images||Test data set|
|V1.6||Docker Images||Test data set|
- Version 1.6 release
- Version 1.5 release
- Version 1.4 release
- Version 1.3 release
- Version 1.2 release
- Assembled isoform of cufflinks don't need to supply,PARPI will calculate it.
1.1 release 10/9/2017
gmap changed to 2017-06-20.
The support of Gene Predictions and RefSeq Genes with Gene Names format(below) has been added.
Field Description geneName Name of gene isoformName Name of isoform chrom Reference sequence strand + or - for strand txStart Transcription start position txEnd Transcription end position cdsStart Coding region start cdsEnd Coding region end exonCount Number of exons exonStarts Exon start positions exonEnds Exon end positions
- Version 1.0 release
- The first public release of PRAPI is now available for download. To use PRAPI, you will need to install docker.You should also install the gmap index for the genome in your RNA-Seq experiment.
1.6 release 8/1/2018
Add an option to enable genome correction function of pacbio reads;
Add version control of test data set,Thank you to Ping Lu from State Key Laboratory of Crop Stress Biology in Arid Area (NWAFU) for bringing this to our attention!
1.5 release 10/12/2017
Improve drawing efficiency.
1.4 release 14/11/2017
Fix some bugs may cause miss-annotation gene identification failture.
1.3 release 24/10/2017
Add the result of gene isoforms from IDP (Au et al., 2013) as input for the identification of alternative splicing events.